STARNet Documentation¶
A unified framework for spatial multi-omics gene regulatory network inference¶
STARNet (SpaTiAl RNA-ATAC-seq gene Regulatory Network) is a computational framework designed to decipher spatially specific gene regulatory networks (GRNs) from spatial RNA-ATAC-seq data.
If you find STARNet useful for your research, please consider citing our preprint.
New to STARNet? Set up your environment with conda and pip.
Step-by-step tutorials covering GRN inference across datasets and downstream applications.
Detailed description of every public module, class, and function in STARNet.
Track the latest updates, new features, and bug fixes in STARNet.
Contributing guidelines, coding standards, and development workflows.
Find a bug? Interested in contributing? Check out our GitHub repository.
Contact¶
Shichen Zhang (zhangshichen@westlake.edu.cn)
Yihai Luo (luoyihai@westlake.edu.cn)